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Mahnaz Kheirkhah, Mostafa Chadeganipour, Parvin Dehghan, Rasoul Mohammadi,
Volume 19, Issue 1 (6-2017)
Abstract

Background: Aspergillus species are opportunistic pathogens among immunocompromised patients. In terms of pathogenesis and mycotoxin production, they are in great value. The aim of the this study was to evaluate of beta-tubulin gene for identification of clinical Aspergillus species by PCR-sequencing method compared to morphological features of clinical isolates (such as conidial shape in direct microscopic examination, colony shape in culture, and physiological tests).

Materials and Methods: In this study, 465 patients referred to the Shefa laboratory of Isfahan were evaluated. Morphological and molecular identification of clinical samples were performed using culture on sabouraud agar, malt extract agar, czapekdox agar, direct microscopy, and PCR-sequencing of beta tubulin gene, respectively. Sequences were analyzed in comparison with gene bank data.

Results: Thirty nine out of 465 suspected cases (8.4%) had aspergillosis. The most prevalent species were Aspergillus flavus (56.4%), A. oryzae (20.5%), and A. fumigatus (10.2%), respectively. Fifty nine percent of patients were females and 49% were males.

Conclusion: In comparison with phenotypic tests, sequencing of beta-tubulin gene for identification of Aspergillus species is at great value. Replacement of molecular techniques with conventional tests is recommended for precise identification of microorganism for better management of infection.


Mehri Habibi, Mohammad Reza Asadi Karam,
Volume 20, Issue 3 (10-2018)
Abstract

Background: Iron adsorption factors are among the most important virulence factors of P. mirabilis causing urinary tract infections. The aim of the present study was the evaluation of the frequency and nucleotide sequence of genes encoding the iron adsorption genes in Proteus mirabilis isolated from patients with urinary tract infections.
Materials and Methods: In total, 100 P. mirabilis isolates were obtained from urine samples of patients with urinary tract infections. Amplification of the iron adsorption genes in the isolates was performed by PCR. For sequencing of the amplified genes, their PCR products were purified from agarose gel using a PCR purification kit and sent for sequencing. After sequencing, the sequences of these genes were compared with the genes deposited in GenBank and Expasy. 
Results: The frequency of PMI1945, PMI2596, PMI0409, PMI1426, PMI0842 and PMI1425 genes in the isolates was 90%, 25%, 35%, 85%, 75% and 55%. Comparison of the nucleotide sequences of these genes using analysis software showed similarity higher than 80% between the sequences of the iron adsorption genes with the iron sequences deposited in Genbank and Expasy.
Conclusion: In this study, it was observed that the iron adsorption genes PMI1945 and PMI1426 with high frequency and conserved sequences among P. mirabilis could be presented as novel vaccine candidates against urinary tract infections.


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